Browsing by Yonsei Author : Kim, Hyongbum

eperson profile image
Name :
Kim, Hyongbum [김형범]
orcid http://orcid.org/0000-0002-4693-738X
Department :
College of Medicine (의과대학) - Dept. of Pharmacology (약리학교실)
Scopus ID :
Scopus (24280276300)

교수 기본정보

세부 전공
Genome Editing

실험실 기본정보

이름
Hyongbum Henry Kim Lab
위치
ABMRC 318호
구분
Wet Lab (80%), Dry Lab (20%)

연구소개

연구 분야
연구 내용
본 연구는 CRISPR-Cas9 기반 유전체 편집 기술의 정확도와 효율을 향상시키고, 이를 다양한 질환의 진단 및 치료에 적용하기 위한 차세대 유전자 치료 기술 개발을 목표로 한다. 연구는 크게 유전체 편집 기술 고도화와 질환 적용 연구의 두 가지 축으로 구성된다.
첫째, 유전체 편집 도구의 정확도 및 편집 효율을 정량적으로 예측할 수 있는 분석 모델을 개발한다. 이를 위해 다양한 표적 서열을 포함하는 대규모 라이브러리 스크리닝 실험을 수행하여 유전체 편집 결과 데이터를 체계적으로 축적한다. 수집된 실험 데이터를 기반으로 딥러닝 모델을 구축하여 표적 서열 특성과 편집 효율 간의 상관관계를 분석하고, 유전체 편집 효율 및 오프타겟 가능성을 사전에 예측할 수 있는 알고리즘을 개발한다. 또한 이러한 예측 모델을 활용하여 CRISPR-Cas9 편집 도구의 설계 및 작동 효율을 개선함으로써 유전체 편집의 정밀도와 재현성을 향상시키고자 한다.
둘째, 고도화된 유전체 편집 기술을 질환 진단 및 치료 연구에 적용한다. 라이브러리 스크리닝을 통해 질환 관련 유전자의 최적 편집 표적을 발굴하고, 이를 기반으로 유전질환 동물 모델을 구축한다. 구축된 모델을 활용하여 유전자 기능을 규명하고, 질환 발현 기전을 분석함으로써 효과적인 진단 및 치료 전략을 개발한다. 나아가 개선된 유전체 편집 기술을 활용한 치료 접근법의 효능과 안전성을 검증하여 임상 적용 가능성을 평가한다.
본 연구를 통해 유전체 편집 기술의 예측 가능성과 효율을 획기적으로 향상시키고, 유전자 치료의 실질적인 활용 범위를 확대함으로써 정밀의학 및 차세대 바이오의료 기술 발전에 기여하고자 한다.

학생 참여 정보

학생들이 참여하면 좋을 연구
  • 유전자 편집기 효율 대량 스크리닝 연구
  • 유전자 편집을 통한 유전 변이의 기능 연구
  • 머신러닝을 응용한 유전 변이 모델링 연구
학생 참여 시 사용하게 되는 장비 및 프로그램
  • Dry - Python, PyTorch, SnapGene, DeepPrime
  • Wet - Clean bench, Micropipette, Light/Fluorescence microscope, Incubator and Freezer
참여 전 준비사항
  • 연구 관련 논문 숙지

Keyword Cloud

Researcher Network

Showing results 1 to 50 of 64

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Issue DateTitleJournal Title
2025Engineered virus-like particles for in vivo gene editing ameliorate hearing loss in murine DFNA2 modelMOLECULAR THERAPY
2025High-throughput evaluation of in vitro CRISPR activities enables optimized large-scale multiplex enrichment of rare variantsNATURE BIOMEDICAL ENGINEERING
2025Comprehensive resistance profiling of chronic myeloid leukaemia associated ABL1 variants against five tyrosine kinase inhibitors using prime editingNATURE BIOMEDICAL ENGINEERING
2025Saturation profiling of drug-resistant genetic variants using prime editingNATURE BIOTECHNOLOGY
2025Functional assessment of all ATM SNVs using prime editing and deep learningCELL
2025Evaluation and prediction of guide RNA activities in genome-editing toolsNATURE REVIEWS BIOENGINEERING
2025Intravitreal adenine base editing of RS1 improves vision in a preclinical mouse model of retinoschisisMOLECULAR THERAPY
2025A rational engineering strategy for structural dynamics modulation enables target specificity enhancement of the Cas9 nuclease NUCLEIC ACIDS RESEARCH
2024In vivo adenine base editing rescues adrenoleukodystrophy in a humanized mouse modelMOLECULAR THERAPY
2024SynDesign: web-based prime editing guide RNA design and evaluation tool for saturation genome editing NUCLEIC ACIDS RESEARCH
2024Deep learning models to predict the editing efficiencies and outcomes of diverse base editorsNATURE BIOTECHNOLOGY
2023Massively parallel evaluation and computational prediction of the activities and specificities of 17 small Cas9sNATURE METHODS
2023Prediction of efficiencies for diverse prime editing systems in multiple cell typesCELL
2023In vivo application of base and prime editing to treat inherited retinal diseasesPROGRESS IN RETINAL AND EYE RESEARCH
2023DNA double-strand break-free CRISPR interference delays Huntington's disease progression in mice COMMUNICATIONS BIOLOGY
2023Sniper2L is a high-fidelity Cas9 variant with high activityNATURE CHEMICAL BIOLOGY
2022Adherens junctions organize size-selective proteolytic hotspots critical for Notch signallingNATURE CELL BIOLOGY
2022Magnetogenetics with Piezo1 Mechanosensitive Ion Channel for CRISPR Gene EditingNANO LETTERS
2022High-throughput functional evaluation of human cancer-associated mutations using base editorsNATURE BIOTECHNOLOGY
2022Generation of mutation-corrected induced pluripotent stem cell lines derived from adrenoleukodystrophy patient by using homology directed repair STEM CELL RESEARCH
2022Basic Principles and Clinical Applications of CRISPR-Based Genome Editing YONSEI MEDICAL JOURNAL
2022In vivo outer hair cell gene editing ameliorates progressive hearing loss in dominant-negative Kcnq4 murine model THERANOSTICS
2022Application of prime editing to the correction of mutations and phenotypes in adult mice with liver and eye diseasesNATURE BIOMEDICAL ENGINEERING
2021Improving CRISPR tools by elucidating DNA repairNATURE BIOTECHNOLOGY
2021Generation of a more efficient prime editor 2 by addition of the Rad51 DNA-binding domain NATURE COMMUNICATIONS
2021Recording of elapsed time and temporal information about biological events using Cas9CELL
2021Predicting the efficiency of prime editing guide RNAs in human cellsNATURE BIOTECHNOLOGY
2020Genome-scale screening of deubiquitinase subfamily identifies USP3 as a stabilizer of Cdc25A regulating cell cycle in cancerCELL DEATH AND DIFFERENTIATION
2020Prediction of the sequence-specific cleavage activity of Cas9 variantsNATURE BIOTECHNOLOGY
2020Sequence-specific prediction of the efficiencies of adenine and cytosine base editorsNATURE BIOTECHNOLOGY
2020Chemical Controllable Gene Drive in DrosophilaACS SYNTHETIC BIOLOGY
2020High-throughput analysis of the activities of xCas9, SpCas9-NG and SpCas9 at matched and mismatched target sequences in human cellsNATURE BIOMEDICAL ENGINEERING
2019LIN28A loss of function is associated with Parkinson's disease pathogenesis EMBO JOURNAL
2019SpCas9 activity prediction by DeepSpCas9, a deep learning-based model with high generalization performance Science Advances
2019Programmable Nuclease-Based Integration into Novel Extragenic Genomic Safe Harbor Identified from Korean Population-Based CNV Analysis Molecular Therapy Oncolytics
2019Therapeutic application of the CRISPR system: current issues and new prospectsHuman Genetics
2019En bloc and segmental deletions of human XIST reveal X chromosome inactivation-involving RNA elements NUCLEIC ACIDS RESEARCH
2018In vivo gene correction with targeted sequence substitution through microhomology-mediated end joiningBIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS
2018Brain Somatic Mutations in MTOR Disrupt Neuronal Ciliogenesis, Leading to Focal Cortical DyslaminationNEURON
2018Paired D10A Cas9 nickases are sometimes more efficient than individual nucleases for gene disruptionNUCLEIC ACIDS RESEARCH
2018Targeting mutant KRAS with CRISPR-Cas9 controls tumor growth GENOME RESEARCH
2018Deep learning improves prediction of CRISPR-Cpf1 guide RNA activityNATURE BIOTECHNOLOGY
2017Targeted Genome Engineering to Control VEGF Expression in Human Umbilical Cord Blood-Derived Mesenchymal Stem Cells: Potential Implications for the Treatment of Myocardial Infarction STEM CELLS TRANSLATIONAL MEDICINE
2017RanBPM: a potential therapeutic target for modulating diverse physiological disordersDRUG DISCOVERY TODAY
2017Constriction of the mitochondrial inner compartment is a priming event for mitochondrial division. NATURE COMMUNICATIONS
2017Concise Review: Fate Determination of Stem Cells by Deubiquitinating EnzymesSTEM CELLS
2017In vivo high-throughput profiling of CRISPR-Cpf1 activityNATURE METHODS
2017Cell-Penetrating Peptide-Mediated Delivery of Cas9 Protein and Guide RNA for Genome EditingMethods in Molecular Biology (Clifton, N.J.)
2017Somatic Mutations in TSC1 and TSC2 Cause Focal Cortical DysplasiaAMERICAN JOURNAL OF HUMAN GENETICS
2016Heroes of peer review: Hyongbum (Henry) Kim GENOME BIOLOGY
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