| 2020 | Wnt/β-catenin signaling pathway induces autophagy-mediated temozolomide-resistance in human glioblastoma | CELL DEATH & DISEASE |
| 2020 | Cross-species oncogenic signatures of breast cancer in canine mammary tumors
| NATURE COMMUNICATIONS |
| 2020 | Prognostic Value of CD200R1 mRNA Expression in Head and Neck Squamous Cell Carcinoma
| CANCERS |
| 2020 | Comparison of whole mitochondrial genome variants between hair shafts and reference samples using massively parallel sequencing | INTERNATIONAL JOURNAL OF LEGAL MEDICINE |
| 2020 | Molecular subtypes of oropharyngeal cancer show distinct immune microenvironment related with immune checkpoint blockade response
| BRITISH JOURNAL OF CANCER |
| 2019 | Molecular characterization of lung adenocarcinoma from Korean patients using next generation sequencing
| PLOS ONE |
| 2019 | BAMixChecker: an automated checkup tool for matched sample pairs in NGS cohort
| BIOINFORMATICS |
| 2019 | Impact of mouse contamination in genomic profiling of patient-derived models and best practice for robust analysis
| GENOME BIOLOGY |
| 2019 | Whole-exome and whole-transcriptome sequencing of canine mammary gland tumors
| Scientific Data |
| 2019 | Investigating the Feasibility of Targeted Next-Generation Sequencing to Guide the Treatment of Head and Neck Squamous Cell Carcinoma
| Cancer Research and Treatment |
| 2019 | Characteristic gene alterations in primary gastrointestinal T- and NK-cell lymphomas | LEUKEMIA |
| 2019 | A therapeutic strategy for chemotherapy-resistant gastric cancer via destabilization of both β-catenin and ras
| CANCERS |
| 2019 | Molecular Diagnostic Assays and Clinicopathologic Implications of MET Exon 14 Skipping Mutation in Non-small-cell Lung Cancer | CLINICAL LUNG CANCER |
| 2019 | The use of technical replication for detection of low-level somatic mutations in next-generation sequencing
| NATURE COMMUNICATIONS |
| 2018 | Neopepsee: accurate genome-level prediction of neoantigens by harnessing sequence and amino acid immunogenicity information | ANNALS OF ONCOLOGY |
| 2018 | AIRVF: a filtering toolbox for precise variant calling in Ion Torrent sequencing | BIOINFORMATICS |
| 2018 | Isoform specific gene expression analysis of KRAS in the prognosis of lung adenocarcinoma patients
| BMC BIOINFORMATICS |
| 2018 | Palmitate and minimally-modified low-density lipoprotein cooperatively promote inflammatory responses in macrophages
| PLOS ONE |
| 2018 | Targeted gene panel and genotype-phenotype correlation in children with developmental and epileptic encephalopathy | EPILEPSY RESEARCH |
| 2017 | Somatic mutation driven codon transition bias in human cancer
| SCIENTIFIC REPORTS |
| 2017 | In Silico Simulation of Signal Cascades in Biomedical Networks Based on the Production Rule System | Lecture Notes in Computer Science |
| 2017 | Next-generation sequencing reveals novel resistance mechanisms and molecular heterogeneity in EGFR-mutant non-small cell lung cancer with acquired resistance to EGFR-TKIs | LUNG CANCER |
| 2017 | Somatic Mutations in TSC1 and TSC2 Cause Focal Cortical Dysplasia | AMERICAN JOURNAL OF HUMAN GENETICS |
| 2016 | Pilot Study of a Next-Generation Sequencing-Based Targeted Anticancer Therapy in Refractory Solid Tumors at a Korean Institution
| PLOS ONE |
| 2016 | Next-generation sequencing reveals somatic mutations that confer exceptional response to everolimus
| ONCOTARGET |
| 2016 | Vecuum: identification and filtration of false somatic variants caused by recombinant vector contamination | BIOINFORMATICS |
| 2016 | ISOexpresso: a web-based platform for isoform-level expression analysis in human cancer
| BMC GENOMICS |
| 2016 | Exome sequencing reveals recurrent REV3L mutations in cisplatin-resistant squamous cell carcinoma of head and neck
| SCIENTIFIC REPORTS |
| 2016 | Establishment and characterisation of patient-derived xenografts as paraclinical models for gastric cancer
| SCIENTIFIC REPORTS |
| 2015 | Analysis of Whole Transcriptome Sequencing Data: Workflow and Software
| Genomics & Informatics |
| 2015 | An AKT3-FOXG1-reelin network underlies defective migration in human focal malformations of cortical development
| NATURE MEDICINE |
| 2015 | SoloDel: a probabilistic model for detecting low-frequent somatic deletions from unmatched sequencing data | BIOINFORMATICS |
| 2015 | Identification of genomic features in the classification of loss- and gain-of-function mutation
| BMC MEDICAL INFORMATICS AND DECISION MAKING |
| 2015 | Context-based resolution of semantic conflicts in biological pathways
| BMC MEDICAL INFORMATICS AND DECISION MAKING |
| 2015 | Brain somatic mutations in MTOR cause focal cortical dysplasia type II leading to intractable epilepsy | NATURE MEDICINE |
| 2014 | A Systems Approach to Predict Oncometabolites via Context-Specific Genome-Scale Metabolic Networks
| PLOS GENETICS |
| 2013 | Evaluating genome architecture of a complex region via generalized bipartite matching
| BMC BIOINFORMATICS |
| 2013 | Wessim: a whole-exome sequencing simulator based on in silico exome capture | BIOINFORMATICS |
| 2013 | Reprever: resolving low-copy duplicated sequences using template driven assembly
| NUCLEIC ACIDS RESEARCH |
| 2013 | Virmid: accurate detection of somatic mutations with sample impurity inference
| GENOME BIOLOGY |
| 2012 | De novo somatic mutations in components of the PI3K-AKT3-mTOR pathway cause hemimegalencephaly | NATURE GENETICS |
| 2011 | Context-dependent transcriptional regulations between signal transduction pathways
| BMC BIOINFORMATICS |
| 2011 | Exploring molecular links between lymph node invasion and cancer prognosis in human breast cancer
| BMC SYSTEMS BIOLOGY |
| 2009 | Mining metastasis related genes by primary-secondary tumor comparisons from large-scale databases
| BMC BIOINFORMATICS |
| 2008 | Computational identification of significantly regulated metabolic reactions by integration of data on enzyme activity and gene expression
| BMB REPORTS |
| 2007 | BioCAD: an information fusion platform for bio-network inference and analysis
| BMC BIOINFORMATICS |
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