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Fine-Scale Spatial Prediction on the Risk of Plasmodium vivax Infection in the Republic of Korea

Authors
 Kyung-Duk Min  ;  Yae Jee Baek  ;  Kyungwon Hwang  ;  Na-Ri Shin  ;  So-Dam Lee  ;  Hyesu Kan  ;  Joon-Sup Yeom 
Citation
 JOURNAL OF KOREAN MEDICAL SCIENCE, Vol.39(22) : e176, 2024-06 
Journal Title
JOURNAL OF KOREAN MEDICAL SCIENCE
ISSN
 1011-8934 
Issue Date
2024-06
MeSH
Algorithms ; Area Under Curve ; Humans ; Incidence ; Machine Learning* ; Malaria, Vivax* / epidemiology ; Plasmodium vivax* / isolation & purification ; ROC Curve* ; Republic of Korea / epidemiology ; Risk Factors
Keywords
Extreme Gradient Boosting ; Generalized Linear Model ; Gradient Boosted Model ; Machine Learning ; Malaria ; Predictor Model
Abstract
Background: Malaria elimination strategies in the Republic of Korea (ROK) have decreased malaria incidence but face challenges due to delayed case detection and response. To improve this, machine learning models for predicting malaria, focusing on high-risk areas, have been developed.

Methods: The study targeted the northern region of ROK, near the demilitarized zone, using a 1-km grid to identify areas for prediction. Grid cells without residential buildings were excluded, leaving 8,425 cells. The prediction was based on whether at least one malaria case was reported in each grid cell per month, using spatial data of patient locations. Four algorithms were used: gradient boosted (GBM), generalized linear (GLM), extreme gradient boosted (XGB), and ensemble models, incorporating environmental, sociodemographic, and meteorological data as predictors. The models were trained with data from May to October (2019-2021) and tested with data from May to October 2022. Model performance was evaluated using the area under the receiver operating characteristic curve (AUROC).

Results: The AUROC of the prediction models performed excellently (GBM = 0.9243, GLM = 0.9060, XGB = 0.9180, and ensemble model = 0.9301). Previous malaria risk, population size, and meteorological factors influenced the model most in GBM and XGB.

Conclusion: Machine-learning models with properly preprocessed malaria case data can provide reliable predictions. Additional predictors, such as mosquito density, should be included in future studies to improve the performance of models.
Files in This Item:
T202404393.pdf Download
DOI
10.3346/jkms.2024.39.e176
Appears in Collections:
1. College of Medicine (의과대학) > Dept. of Internal Medicine (내과학교실) > 1. Journal Papers
Yonsei Authors
Yeom, Joon Sup(염준섭) ORCID logo https://orcid.org/0000-0001-8940-7170
URI
https://ir.ymlib.yonsei.ac.kr/handle/22282913/200168
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