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Consensus subtypes of hepatocellular carcinoma associated with clinical outcomes and genomic phenotypes

Authors
 Sung Hwan Lee  ;  Sun Young Yim  ;  Yun Seong Jeong  ;  Qi-Xiang Li  ;  Sang-Hee Kang  ;  Bo Hwa Sohn  ;  Shwetha V Kumar  ;  Ji-Hyun Shin  ;  You Rhee Choi  ;  Jae-Jun Shim  ;  Hayeon Kim  ;  Ji Hoon Kim  ;  Shin Kim  ;  Sheng Guo  ;  Randy L Johnson  ;  Ahmed Kaseb  ;  Koo Jeong Kang  ;  Yun Shin Chun  ;  Hee Jin Jang  ;  Byoung Gill Lee  ;  Hyun Goo Woo  ;  Min Jin Ha  ;  Rehan Akbani  ;  Lewis R Roberts  ;  David A Wheeler  ;  Ju-Seog Lee 
Citation
 HEPATOLOGY, Vol.76(6) : 1634-1648, 2022-12 
Journal Title
HEPATOLOGY
ISSN
 0270-9139 
Issue Date
2022-12
MeSH
Carcinoma, Hepatocellular* / pathology ; Consensus ; Female ; Genomics ; Humans ; Liver Neoplasms* / pathology ; Male ; Phenotype ; Proteomics ; beta Catenin / genetics
Abstract
Background and aims: Although many studies revealed transcriptomic subtypes of HCC, concordance of the subtypes are not fully examined. We aim to examine a consensus of transcriptomic subtypes and correlate them with clinical outcomes.

Approach and results: By integrating 16 previously established genomic signatures for HCC subtypes, we identified five clinically and molecularly distinct consensus subtypes. STM (STeM) is characterized by high stem cell features, vascular invasion, and poor prognosis. CIN (Chromosomal INstability) has moderate stem cell features, but high genomic instability and low immune activity. IMH (IMmune High) is characterized by high immune activity. BCM (Beta-Catenin with high Male predominance) is characterized by prominent β-catenin activation, low miRNA expression, hypomethylation, and high sensitivity to sorafenib. DLP (Differentiated and Low Proliferation) is differentiated with high hepatocyte nuclear factor 4A activity. We also developed and validated a robust predictor of consensus subtype with 100 genes and demonstrated that five subtypes were well conserved in patient-derived xenograft models and cell lines. By analyzing serum proteomic data from the same patients, we further identified potential serum biomarkers that can stratify patients into subtypes.

Conclusions: Five HCC subtypes are correlated with genomic phenotypes and clinical outcomes and highly conserved in preclinical models, providing a framework for selecting the most appropriate models for preclinical studies.
Full Text
https://aasldpubs.onlinelibrary.wiley.com/doi/10.1002/hep.32490
DOI
10.1002/hep.32490
Appears in Collections:
4. Graduate School of Public Health (보건대학원) > Graduate School of Public Health (보건대학원) > 1. Journal Papers
Yonsei Authors
Lee, Sung Hwan(이성환)
Ha, Min Jin(하민진)
URI
https://ir.ymlib.yonsei.ac.kr/handle/22282913/192359
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