25 91

Cited 0 times in

ShinyGO: a graphical gene-set enrichment tool for animals and plants

Authors
 Steven Xijin Ge  ;  Dongmin Jung  ;  Runan Yao 
Citation
 BIOINFORMATICS, Vol.36(8) : 2628-2629, 2020-04 
Journal Title
BIOINFORMATICS
ISSN
 1367-4803 
Issue Date
2020-04
MeSH
Animals ; Computational Biology ; Databases, Factual ; Databases, Genetic* ; Gene Ontology ; Internet ; Probability ; Software*
Abstract
Motivation: Gene lists are routinely produced from various omic studies. Enrichment analysis can link these gene lists with underlying molecular pathways and functional categories such as gene ontology (GO) and other databases. Results: To complement existing tools, we developed ShinyGO based on a large annotation database derived from Ensembl and STRING-db for 59 plant, 256 animal, 115 archeal and 1678 bacterial species. ShinyGO's novel features include graphical visualization of enrichment results and gene characteristics, and application program interface access to KEGG and STRING for the retrieval of pathway diagrams and protein-protein interaction networks. ShinyGO is an intuitive, graphical web application that can help researchers gain actionable insights from gene-sets.
Files in This Item:
T9992020364.pdf Download
DOI
10.1093/bioinformatics/btz931
Appears in Collections:
1. College of Medicine (의과대학) > BioMedical Science Institute (의생명과학부) > 1. Journal Papers
URI
https://ir.ymlib.yonsei.ac.kr/handle/22282913/190139
사서에게 알리기
  feedback

qrcode

Items in DSpace are protected by copyright, with all rights reserved, unless otherwise indicated.

Browse

Links