Cited 76 times in
mtDNAmanager: a Web-based tool for the management and quality analysis of mitochondrial DNA control-region sequences
DC Field | Value | Language |
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dc.contributor.author | 신경진 | - |
dc.contributor.author | 양우익 | - |
dc.contributor.author | 이환영 | - |
dc.date.accessioned | 2015-05-19T17:21:01Z | - |
dc.date.available | 2015-05-19T17:21:01Z | - |
dc.date.issued | 2008 | - |
dc.identifier.uri | https://ir.ymlib.yonsei.ac.kr/handle/22282913/107980 | - |
dc.description.abstract | BACKGROUND: For the past few years, scientific controversy has surrounded the large number of errors in forensic and literature mitochondrial DNA (mtDNA) data. However, recent research has shown that using mtDNA phylogeny and referring to known mtDNA haplotypes can be useful for checking the quality of sequence data. RESULTS: We developed a Web-based bioinformatics resource "mtDNAmanager" that offers a convenient interface supporting the management and quality analysis of mtDNA sequence data. The mtDNAmanager performs computations on mtDNA control-region sequences to estimate the most-probable mtDNA haplogroups and retrieves similar sequences from a selected database. By the phased designation of the most-probable haplogroups (both expected and estimated haplogroups), mtDNAmanager enables users to systematically detect errors whilst allowing for confirmation of the presence of clear key diagnostic mutations and accompanying mutations. The query tools of mtDNAmanager also facilitate database screening with two options of "match" and "include the queried nucleotide polymorphism". In addition, mtDNAmanager provides Web interfaces for users to manage and analyse their own data in batch mode. CONCLUSION: The mtDNAmanager will provide systematic routines for mtDNA sequence data management and analysis via easily accessible Web interfaces, and thus should be very useful for population, medical and forensic studies that employ mtDNA analysis. mtDNAmanager can be accessed at http://mtmanager.yonsei.ac.kr | - |
dc.description.statementOfResponsibility | open | - |
dc.format.extent | 483 | - |
dc.relation.isPartOf | BMC BIOINFORMATICS | - |
dc.rights | CC BY-NC-ND 2.0 KR | - |
dc.rights.uri | https://creativecommons.org/licenses/by-nc-nd/2.0/kr/ | - |
dc.subject.MESH | Base Sequence | - |
dc.subject.MESH | Computational Biology/methods* | - |
dc.subject.MESH | DNA, Mitochondrial/genetics* | - |
dc.subject.MESH | Databases, Genetic* | - |
dc.subject.MESH | Haplotypes/genetics | - |
dc.subject.MESH | Internet* | - |
dc.subject.MESH | Locus Control Region/genetics* | - |
dc.subject.MESH | Molecular Sequence Data | - |
dc.subject.MESH | Phylogeny | - |
dc.subject.MESH | Research Design | - |
dc.subject.MESH | Software* | - |
dc.title | mtDNAmanager: a Web-based tool for the management and quality analysis of mitochondrial DNA control-region sequences | - |
dc.type | Article | - |
dc.contributor.college | College of Medicine (의과대학) | - |
dc.contributor.department | Dept. of Forensic Medicine (법의학) | - |
dc.contributor.googleauthor | Hwan Young Lee | - |
dc.contributor.googleauthor | Injee Song | - |
dc.contributor.googleauthor | Eunho Ha | - |
dc.contributor.googleauthor | Sung-Bae Cho | - |
dc.contributor.googleauthor | Woo Ick Yang | - |
dc.contributor.googleauthor | Kyoung-Jin Shin | - |
dc.identifier.doi | 10.1186/1471-2105-9-483 | - |
dc.admin.author | false | - |
dc.admin.mapping | false | - |
dc.contributor.localId | A02085 | - |
dc.contributor.localId | A02300 | - |
dc.contributor.localId | A03335 | - |
dc.relation.journalcode | J00350 | - |
dc.identifier.eissn | 1471-2105 | - |
dc.identifier.pmid | 19014619 | - |
dc.subject.keyword | Base Sequence | - |
dc.subject.keyword | Computational Biology/methods* | - |
dc.subject.keyword | DNA, Mitochondrial/genetics* | - |
dc.subject.keyword | Databases, Genetic* | - |
dc.subject.keyword | Haplotypes/genetics | - |
dc.subject.keyword | Internet* | - |
dc.subject.keyword | Locus Control Region/genetics* | - |
dc.subject.keyword | Molecular Sequence Data | - |
dc.subject.keyword | Phylogeny | - |
dc.subject.keyword | Research Design | - |
dc.subject.keyword | Software* | - |
dc.contributor.alternativeName | Shin, Kyoung Jin | - |
dc.contributor.alternativeName | Yang, Woo Ick | - |
dc.contributor.alternativeName | Lee, Hwan Young | - |
dc.contributor.affiliatedAuthor | Shin, Kyoung Jin | - |
dc.contributor.affiliatedAuthor | Yang, Woo Ick | - |
dc.contributor.affiliatedAuthor | Lee, Hwan Young | - |
dc.rights.accessRights | free | - |
dc.citation.volume | 9 | - |
dc.citation.startPage | 483 | - |
dc.identifier.bibliographicCitation | BMC BIOINFORMATICS, Vol.9 : 483, 2008 | - |
dc.identifier.rimsid | 50039 | - |
dc.type.rims | ART | - |
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